PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013081
Common NameLOC102600986
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 254aa    MW: 28721.5 Da    PI: 8.8956
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013081genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-30130189159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++DgynWrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs +d ++++ tYegeHnh+
  PGSC0003DMP400013081 130 VKDGYNWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQRSVKDASILVATYEGEHNHP 189
                           58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-29124191IPR003657WRKY domain
PROSITE profilePS5081126.808125191IPR003657WRKY domain
SuperFamilySSF1182902.88E-25126191IPR003657WRKY domain
SMARTSM007741.1E-33130190IPR003657WRKY domain
PfamPF031068.7E-24131189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGNKSFFIDL NTNPLLHNIN RSPIPRETLD EELSRMRKEN KKLATTLTSL CEKYNSLQTH  60
IIELQQKYST HEEDNSKLLL SRKRKAEEEY CVNNSYINIE EASPKRPREI ITNISTVCVK  120
TSPSDQTSVV KDGYNWRKYG QKVTRDNPSP RAYFKCSFAP TCPVKKKVQR SVKDASILVA  180
TYEGEHNHPQ PSQAEITVPL VNASDPTFLN KFMEDINTNS LQQQYLVEQM ASSLSKNPSF  240
AATVATAISG LLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-201291911374WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755201e-140HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170804.10.0PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH71e-59WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLM1ABK30.0M1ABK3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000190610.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45002242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.18e-61WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]